Proceedings of WCB07 Workshop on Constraint Based Methods for Bioinformatics

نویسندگان

  • Rolf Backofen
  • Alessandro Dal Palù
  • Sebastian Will
  • Luca Bortolussi
  • Simone Fonda
  • Alberto Policriti
  • Alessandro Dal Palu
  • Agostino Dovier
  • Enrico Pontelli
  • Elisabetta De Maria
  • Marco Zantoni
  • Francois Fages
  • Aurelien Rizk
  • Ludwig Krippahl
  • Pedro Barahona
  • Abdelhalim Larhlimi
  • Alexander Bockmayr
چکیده

We present a method to simulate biochemical networks described by the graphical notation of Molecular Interaction Maps within stochastic Concurrent Constraint Programming. Such maps are compact, as they represent implicitly a wide set of reactions, and therefore not easy to simulate with standard tools. The encoding we propose is capable to stochastically simulate these maps implicitly, without generating the full list of reactions.

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تاریخ انتشار 2007